CDS

Accession Number TCMCG057C18134
gbkey CDS
Protein Id XP_018485041.1
Location complement(join(18777313..18777375,18777458..18778837,18778980..18779132,18779227..18779307,18779397..18779516,18779600..18779752,18779865..18780008,18780088..18780454,18780551..18780718,18780931..18781160,18781237..18781337,18781455..18781533))
Gene LOC108855668
GeneID 108855668
Organism Raphanus sativus

Protein

Length 1012aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018629539.1
Definition PREDICTED: pre-mRNA-processing factor 39 isoform X1 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description HAT (Half-A-TPR) repeats
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K13217        [VIEW IN KEGG]
EC -
KEGG_Pathway -
GOs GO:0000243        [VIEW IN EMBL-EBI]
GO:0000245        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000395        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005685        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006376        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045292        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0071004        [VIEW IN EMBL-EBI]
GO:0071010        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTGACTACGGAGGCTAGCACCGCCGTCTCCGGTATGGAACCAATGTCTCCGCCCCTAGAATCAGACGGCCCTACTGATTTCCTTGATAATGAGAGGCTAAAGGCAACGTTTTCAAGTGGAAGTCTTGATTTTGATGATTGGACTTTGTTAATCTCTGAAGTAGAGACTTCGTTCCCAGATGATATTGAGAAGCTGTGTCTAGTGTACGATGCTTTCTTGTTGGAGTTTCCGCTGTGCCATGGCTACTGGAGGAAGTATGCTTACCACAAGATACATTTTTGCACTCTAGAAGATGCTGTTGAAGTTCTCGAACGAGCAATCCAAGCAGCTACTTATTCTCTAGATGTATGGCTTGACTATTGCACTTTCGCTGTTGCTGCGTATGAAGATCCTAATGATGTTTGTAGATTATTTGAGAGGGGGATCTCATTTGTTGGGAAAGATTATTCTTGCTGCGCTCTCTGGGACAAATATATAGACTTTCTCTTGATTAAGAAGCATTGGAGTTCACTGGCACACGTATATCTCCGGACCCTGAGATACCCATCCAAAAAGTTGGATTTTTATTACAAGAACTTCAGAAAGATTGCAGCTTCTTTGAAAGAGAAGATTAAATGTGGAATAGAAGTTAACGGTGACCTTTCTTCAGACCCCATGGATGAAGATTTGGCCCCTAAGCGTCACAGTGAGGAGGAGATCTCTGTTGTTATAAGAGACTTGATGGGTCCTTCTTCTAGCTTGGCCGTGGCAAAAGCACTGCATGCATATTTGTCAATAGGGGAACAGTTCTATCAAGATTCGCAGGAACTGAAGGAAAAAATAAGTTGCTTTGAGACGCAAATCCGCAGGCCTTATTTTCATGTAAAGCCGTTGGACACTAATCAGCTAGACAATTGGCATAAGTATCTGAGCTTTGCAGAAACATATGGGGACTTTGATTGGGCTATTAAGCTTTATGAGAGATGCTTAATACCATGCGCTAATTACACCGAGTTCTGGTTCCGCTATGTGGATTTTGTTGAAAGCAATGGTGGAAGGGAGCTAGCAAACTTCGCGTTGGCCCGAGCATCACAAACTTTTGTCAAGGATGCATCTGCTATCCATCTATTCAATGCACGATTCAAGGAACACGTTGGAGATGCATCTGCCGCTTCTGTTGCTCTGTCTCGATGTGGCGAGGAGCTTGGTGTTGGTTTTGTTGAAAATGTAACTAAGAAGGCTAACATGGAGAAACGAATGGGTAATTTTGAAGCAGCTATTAGTACATACAGAGAGGCTCTGAAGAAAACACTCAGTGGAAAAGAAAACTTAGAAATCACTGCACTGTTGTATGTTCAATTTTCTCGTCTCAAGTACATGATAACAAACAATGCTGATGAGGCAGCTCAGATTCTGATAGAGGGGAATGAGAAAGTTCCTCACTGCAAATTACTTTTAGAGGAGCTTATAAGACTCGTAATGATGCATGGAGGAGGGTGTCGACAAGTTGATTTGTTACATCCAATCATAGATAAAGAAATATCTCACCAGGATGATTCCTCCGGTGGTCTGAGCGCAGAGGACAAGGAGAACATTTCAAATTTATACATGGAGTTCATTGACCTGTCTGGAACCATACATGATGTGAGGAAGGCTTTGCGTCGACACATTAAATTATTCCCACATTCTGCCAAAGCCAAGTTGCATGAGTCCCGTCCTTTGGGGAATTCGCTAAGAGAGTTGATTCAACAAAGAGAAAAGACTCGTGAGTGCTTAAATCAGGACCTATCAACAAACAAAGGCACTGGCAGCAACACGCTTGAAGAAAAGAAAGACTTTCCTCTGATTCTGAACTCTGATGATGCTGACTATATAAACACCGAGCCTAATGGGGAGTCTCACGTTGAAGAAAACAATAATGTTGCAGATAGGAAGAAGCTCTGTGAGTCACAGAATGATCTGTCTACGGGACAAAAGTCGAATGAAGGTGGTGAACGCTCTCGTGAAGTAAGCCTGCCAATAAAAAACACGCCGCCTGAACCTGGGTTTGTCTCTAAACAAGCTCACTTCTCTTGCAGTTCAGTAGATACTGTGAAATCTGATGCTATAGAGATCCAACCCAGTGGCTTTCGGAGTCACCAAAACCAAGAGTTTCTCAGGCAAGCTAGTCGAAACAGGTTCCAGAGGAGAGATTTCAACCAGAATCGTAGAGATCACAAACCTCGTTCACAGGAGAGACCTCCCCAGATGTCGTATCCTCCTCCAGTCACAACTGGTCGTGGGGGTTTTAACCAGCTGATGGGTGTTTCTCCTCGAGACAATCCCTCAGTCTCACAGAGTCTGCAAAACCAGTGTCAGTACCCCATGGTTCAACCATCTAATGCATATCCCCCTCAAGCCCAGATTCCTGGACACCACATGAATGTAGCCTCGTCTGAGAATCCAGCAGCAGTGCAAAACTCATTCTATCAGATTCCTCAGAACCAACATCAAGGCTCTGCAGCTCAGGTTCAACCATCCTTCGCTTATCCTCAGTCTCAGATTCCTCAGCATCCAGTGCAAAGTAATGACCAAACAGAGGGTCAAGTGCAGAGCTACGAAGCTTATAATCAGATGTGGCAACAATATTACTATTACAATTACCACTACTACCAACAACAACAACAGCAACAGCTTCTGTCTGAACAACCACAACCAAATCAGAATAATCCTCACCCGCAACAAGATCCGAATCTTCTCTCCAAACAGTACCAAACTCAAGCTGGAACTCAGCACCCGCAATCTCAGCATGTGGATACACAGCAACATAGCCAAGAACCACAAAATCAACAGCAAATTCTATACCAACAACAACAACAACAAGAGTGGTTTCAACAGCAGCAAGAGTATCATCTCTATCTTCAGCAACAAGAGTTGCAAGGAGAAGCAAAAGGTCATGAACAGAGACCCTCTGTGCCACAAGTCTCCACAAGGGACAGTGATATACTACAAAAGAGTGGAGAATCTGGAGGACATGAAGTAGAACATTCTTCTGACACTTCCATCACTTCCATATGA
Protein:  
MVTTEASTAVSGMEPMSPPLESDGPTDFLDNERLKATFSSGSLDFDDWTLLISEVETSFPDDIEKLCLVYDAFLLEFPLCHGYWRKYAYHKIHFCTLEDAVEVLERAIQAATYSLDVWLDYCTFAVAAYEDPNDVCRLFERGISFVGKDYSCCALWDKYIDFLLIKKHWSSLAHVYLRTLRYPSKKLDFYYKNFRKIAASLKEKIKCGIEVNGDLSSDPMDEDLAPKRHSEEEISVVIRDLMGPSSSLAVAKALHAYLSIGEQFYQDSQELKEKISCFETQIRRPYFHVKPLDTNQLDNWHKYLSFAETYGDFDWAIKLYERCLIPCANYTEFWFRYVDFVESNGGRELANFALARASQTFVKDASAIHLFNARFKEHVGDASAASVALSRCGEELGVGFVENVTKKANMEKRMGNFEAAISTYREALKKTLSGKENLEITALLYVQFSRLKYMITNNADEAAQILIEGNEKVPHCKLLLEELIRLVMMHGGGCRQVDLLHPIIDKEISHQDDSSGGLSAEDKENISNLYMEFIDLSGTIHDVRKALRRHIKLFPHSAKAKLHESRPLGNSLRELIQQREKTRECLNQDLSTNKGTGSNTLEEKKDFPLILNSDDADYINTEPNGESHVEENNNVADRKKLCESQNDLSTGQKSNEGGERSREVSLPIKNTPPEPGFVSKQAHFSCSSVDTVKSDAIEIQPSGFRSHQNQEFLRQASRNRFQRRDFNQNRRDHKPRSQERPPQMSYPPPVTTGRGGFNQLMGVSPRDNPSVSQSLQNQCQYPMVQPSNAYPPQAQIPGHHMNVASSENPAAVQNSFYQIPQNQHQGSAAQVQPSFAYPQSQIPQHPVQSNDQTEGQVQSYEAYNQMWQQYYYYNYHYYQQQQQQQLLSEQPQPNQNNPHPQQDPNLLSKQYQTQAGTQHPQSQHVDTQQHSQEPQNQQQILYQQQQQQEWFQQQQEYHLYLQQQELQGEAKGHEQRPSVPQVSTRDSDILQKSGESGGHEVEHSSDTSITSI